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Peptide record

TPDB17530

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB17530
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
SPGDGATFPK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C43H65N11O15
RNCEQHILMWYV
GP
976.05
6.75
1
1
2
-0
1.36
-0.830
10.00
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
2
Residue Composition
number
1
A
0
R
0
N
1
D
0
C
0
E
0
Q
2
G
0
H
0
I
0
L
1
K
0
M
1
F
2
P
1
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 0 L: 0 K: 1 M: 0 F: 1 P: 2 S: 1 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
10 reviewed residue count
C43H65N11O15 sequence-only estimate (linear, free termini)
976.05 sequence-only estimate (linear, free termini)
6.75 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
1.36 sequence-only estimate (linear, free termini)
-0.830 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.