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Peptide record

TPDB17515

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB17515
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GGTLNPGLAPAPVHKF
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C73H114N20O19
RDCEQIMSWY
GP
1575.83
10.10
2
0
6
+1
-0.24
0.056
79.38
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
2
Residue Composition
number
2
A
0
R
1
N
0
D
0
C
0
E
0
Q
3
G
1
H
0
I
2
L
1
K
0
M
1
F
3
P
0
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 2 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 3 H: 1 I: 0 L: 2 K: 1 M: 0 F: 1 P: 3 S: 0 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
16 reviewed residue count
C73H114N20O19 sequence-only estimate (linear, free termini)
1575.83 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.24 sequence-only estimate (linear, free termini)
0.056 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.