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Peptide record

TPDB17476

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB17476
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RPDKPRPYDPRSRPPRPVR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C102H168N38O26
ANCEQGHILMFTW
P
2342.70
12.11
7
2
2
+5
5.90
-2.474
15.26
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1490
0.64
2
Residue Composition
number
0
A
6
R
0
N
2
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
1
K
0
M
0
F
7
P
1
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 6 N: 0 D: 2 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 1 M: 0 F: 0 P: 7 S: 1 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
19 reviewed residue count
C102H168N38O26 sequence-only estimate (linear, free termini)
2342.70 sequence-only estimate (linear, free termini)
12.11 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
5.90 sequence-only estimate (linear, free termini)
-2.474 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.