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Peptide record

TPDB17415

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB17415
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RPFFPRPYSPRPRPPRPVR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C111H171N37O22
ANDCEQGHILKMTW
P
2375.81
12.70
6
0
4
+6
4.37
-1.689
15.26
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1490
0.63
2
Residue Composition
number
0
A
6
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
0
K
0
M
2
F
8
P
1
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 6 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 0 M: 0 F: 2 P: 8 S: 1 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
19 reviewed residue count
C111H171N37O22 sequence-only estimate (linear, free termini)
2375.81 sequence-only estimate (linear, free termini)
12.70 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
4.37 sequence-only estimate (linear, free termini)
-1.689 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.