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Peptide record

TPDB17328

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB17328
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RPDLPRPYLPRPRPPRPVR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C106H175N37O23
ANCEQGHIKMFSTW
P
2335.79
12.40
6
1
4
+5
4.45
-1.726
56.32
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1490
0.64
1
Residue Composition
number
0
A
6
R
0
N
1
D
0
C
0
E
0
Q
0
G
0
H
0
I
2
L
0
K
0
M
0
F
8
P
0
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 6 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 2 K: 0 M: 0 F: 0 P: 8 S: 0 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
19 reviewed residue count
C106H175N37O23 sequence-only estimate (linear, free termini)
2335.79 sequence-only estimate (linear, free termini)
12.40 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
4.45 sequence-only estimate (linear, free termini)
-1.726 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.