TPDB

3D PDB MODEL

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TPDB ID TPDB17306

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 65-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

QLNIQGGGSPHSGFDLSVQGRAKIWESDNGRNTLYGTGQYGQHLGGPYGNSEPSFGGGLMFSHRF

FASTA

>TPDB17306|Antibacterial|length=65
QLNIQGGGSPHSGFDLSVQGRAKIWESDNGRNTLYGTGQYGQHLGGPYGNSEPSFGGGLMFSHRF

Formula C304H447N91O95S1

Absent Amino Acids C

Common Amino Acids G

Mass 6928.51

PI 7.90

Basic Residues 7

Acidic Residues 4

Hydrophobic Residues 18

Net Charge +0

Boman Index 7.13

Hydrophobicity -0.738

Aliphatic Index 48.00

Half Life

Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour

Extinction Coefficient Cystines 9970

Absorbance 280nm 143.90

Polar Residues 21

number

1

A

3

R

4

N

2

D

0

C

2

E

5

Q

15

G

3

H

2

I

5

L

1

K

1

M

4

F

3

P

7

S

2

T

1

W

3

Y

1

V

Amino Acid Distribution

A: 1 R: 3 N: 4 D: 2 C: 0 E: 2 Q: 5 G: 15 H: 3 I: 2 L: 5 K: 1 M: 1 F: 4 P: 3 S: 7 T: 2 W: 1 Y: 3 V: 1

Length

65

Formula

C304H447N91O95S1

Mass

6928.51

PI

7.90

Net Charge

+0

Boman Index

7.13

Hydrophobicity

-0.738

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.