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Peptide record

TPDB17290

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB17290
Antibacterial
Anti-infective peptides
dbAMP pep-lab Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, pep-lab, and Peptipedia, with an available 3D structural model.
Sequence
LKKISQYYQKFAWPQYL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C109H158N24O25
RNDCEGHMTV
QKY
2204.60
10.06
3
0
9
+3
0.89
-0.747
74.71
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
9970
4.52
7
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
3
Q
0
G
0
H
1
I
2
L
3
K
0
M
1
F
1
P
1
S
0
T
1
W
3
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 3 G: 0 H: 0 I: 1 L: 2 K: 3 M: 0 F: 1 P: 1 S: 1 T: 0 W: 1 Y: 3 V: 0
Chemical Descriptors
17 reviewed residue count
C109H158N24O25 sequence-only estimate (linear, free termini)
2204.60 sequence-only estimate (linear, free termini)
10.06 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
0.89 sequence-only estimate (linear, free termini)
-0.747 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.