TPDB

3D PDB MODEL

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TPDB ID TPDB17282

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 54-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

GSGYCKPVMVGANGYACRYSNGRWDYKVTKGIFQATTDVIVKGWAEYGPWIPRH

FASTA

>TPDB17282|Antibacterial|length=54
GSGYCKPVMVGANGYACRYSNGRWDYKVTKGIFQATTDVIVKGWAEYGPWIPRH

Formula C276H407N75O74S3

Absent Amino Acids L

Common Amino Acids G

Mass 6055.91

PI 9.58

Basic Residues 8

Acidic Residues 3

Hydrophobic Residues 22

Net Charge +4

Boman Index 2.01

Hydrophobicity -0.422

Aliphatic Index 55.93

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 24075

Absorbance 280nm 397.55

Polar Residues 15

number

4

A

3

R

2

N

2

D

2

C

1

E

1

Q

8

G

1

H

3

I

0

L

4

K

1

M

1

F

3

P

2

S

3

T

3

W

5

Y

5

V

Amino Acid Distribution

A: 4 R: 3 N: 2 D: 2 C: 2 E: 1 Q: 1 G: 8 H: 1 I: 3 L: 0 K: 4 M: 1 F: 1 P: 3 S: 2 T: 3 W: 3 Y: 5 V: 5

Length

54

Formula

C276H407N75O74S3

Mass

6055.91

PI

9.58

Net Charge

+4

Boman Index

2.01

Hydrophobicity

-0.422

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.