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Peptide record

TPDB17281

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB17281
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
TVKVLVKWILKVVAKFA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C97H164N22O19
RNDCEQGHMPSY
V
1942.51
11.00
4
0
12
+4
-1.12
1.312
165.88
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
5500
2.83
1
Residue Composition
number
2
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
1
I
2
L
4
K
0
M
1
F
0
P
0
S
1
T
1
W
0
Y
5
V
Amino Acid Distribution
A: 2 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 1 L: 2 K: 4 M: 0 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 5
Chemical Descriptors
17 reviewed residue count
C97H164N22O19 sequence-only estimate (linear, free termini)
1942.51 sequence-only estimate (linear, free termini)
11.00 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
-1.12 sequence-only estimate (linear, free termini)
1.312 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.