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Peptide record

TPDB17260

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB17260
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
TVGGLVKWILDTVKKFI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C93H153N21O22
ARNCEQHMPSY
KV
1917.37
10.32
3
1
9
+2
-0.50
0.806
142.94
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
5500
2.87
2
Residue Composition
number
0
A
0
R
0
N
1
D
0
C
0
E
0
Q
2
G
0
H
2
I
2
L
3
K
0
M
1
F
0
P
0
S
2
T
1
W
0
Y
3
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 2 L: 2 K: 3 M: 0 F: 1 P: 0 S: 0 T: 2 W: 1 Y: 0 V: 3
Chemical Descriptors
17 reviewed residue count
C93H153N21O22 sequence-only estimate (linear, free termini)
1917.37 sequence-only estimate (linear, free termini)
10.32 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
-0.50 sequence-only estimate (linear, free termini)
0.806 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.