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Peptide record

TPDB17245

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB17245
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
DHDFNAGWGK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C51H67N15O16
RCEQILMPSTYV
DG
1146.18
5.10
2
2
3
-1
2.53
-1.470
10.00
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
5500
4.80
1
Residue Composition
number
1
A
0
R
1
N
2
D
0
C
0
E
0
Q
2
G
1
H
0
I
0
L
1
K
0
M
1
F
0
P
0
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 1 D: 2 C: 0 E: 0 Q: 0 G: 2 H: 1 I: 0 L: 0 K: 1 M: 0 F: 1 P: 0 S: 0 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
10 reviewed residue count
C51H67N15O16 sequence-only estimate (linear, free termini)
1146.18 sequence-only estimate (linear, free termini)
5.10 sequence-only estimate (linear, free termini)
-1 sequence-only estimate (linear, free termini)
2.53 sequence-only estimate (linear, free termini)
-1.470 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.