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Peptide record

TPDB17149

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB17149
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RWKIFKKIPKFLHSAKKW
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C117H181N31O20
NDCEQGMTYV
K
2341.92
11.90
8
0
8
+7
1.62
-0.839
70.56
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
11000
4.70
1
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
0
E
0
Q
0
G
1
H
2
I
1
L
6
K
0
M
2
F
1
P
1
S
0
T
2
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 1 I: 2 L: 1 K: 6 M: 0 F: 2 P: 1 S: 1 T: 0 W: 2 Y: 0 V: 0
Chemical Descriptors
18 reviewed residue count
C117H181N31O20 sequence-only estimate (linear, free termini)
2341.92 sequence-only estimate (linear, free termini)
11.90 sequence-only estimate (linear, free termini)
+7 sequence-only estimate (linear, free termini)
1.62 sequence-only estimate (linear, free termini)
-0.839 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.