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Peptide record

TPDB17118

Antibacterial standard
6 amino acids
Basic Information
3D PDB MODEL
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TPDB17118
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 6-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KCCKKP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C29H55N9O7S2
ARNDEQGHILMFSTWYV
K
705.93
9.80
3
0
0
+3
2.35
-1.383
0.00
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
125
0.18
2
Residue Composition
number
0
A
0
R
0
N
0
D
2
C
0
E
0
Q
0
G
0
H
0
I
0
L
3
K
0
M
0
F
1
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 2 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 3 M: 0 F: 0 P: 1 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
6 reviewed residue count
C29H55N9O7S2 sequence-only estimate (linear, free termini)
705.93 sequence-only estimate (linear, free termini)
9.80 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
2.35 sequence-only estimate (linear, free termini)
-1.383 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.