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Peptide record

TPDB17099

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB17099
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
TVAAQLLKKARCKLDKSC
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C84H154N26O24S2
NEGHIMFPWY
K
1976.43
10.17
5
1
7
+4
1.70
-0.144
97.78
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
125
0.06
5
Residue Composition
number
3
A
1
R
0
N
1
D
2
C
0
E
1
Q
0
G
0
H
0
I
3
L
4
K
0
M
0
F
0
P
1
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 3 R: 1 N: 0 D: 1 C: 2 E: 0 Q: 1 G: 0 H: 0 I: 0 L: 3 K: 4 M: 0 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
18 reviewed residue count
C84H154N26O24S2 sequence-only estimate (linear, free termini)
1976.43 sequence-only estimate (linear, free termini)
10.17 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.70 sequence-only estimate (linear, free termini)
-0.144 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.