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Peptide record

TPDB17098

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB17098
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GVIFNALK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C41H68N10O10
RDCEQHMPSTWY
ANGILKFV
861.05
10.10
1
0
5
+1
-0.93
1.163
146.25
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
1
Residue Composition
number
1
A
0
R
1
N
0
D
0
C
0
E
0
Q
1
G
0
H
1
I
1
L
1
K
0
M
1
F
0
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 1 L: 1 K: 1 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
8 reviewed residue count
C41H68N10O10 sequence-only estimate (linear, free termini)
861.05 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.93 sequence-only estimate (linear, free termini)
1.163 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.