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Peptide record

TPDB17096

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB17096
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GVIFNALKGVAKTVAAQLLK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C95H165N25O24
RDCEHMPSWY
A
2041.51
10.84
3
0
12
+3
-0.63
0.915
141.50
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
3
Residue Composition
number
4
A
0
R
1
N
0
D
0
C
0
E
1
Q
2
G
0
H
1
I
3
L
3
K
0
M
1
F
0
P
0
S
1
T
0
W
0
Y
3
V
Amino Acid Distribution
A: 4 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 1 G: 2 H: 0 I: 1 L: 3 K: 3 M: 0 F: 1 P: 0 S: 0 T: 1 W: 0 Y: 0 V: 3
Chemical Descriptors
20 reviewed residue count
C95H165N25O24 sequence-only estimate (linear, free termini)
2041.51 sequence-only estimate (linear, free termini)
10.84 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
-0.63 sequence-only estimate (linear, free termini)
0.915 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.