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Peptide record

TPDB17086

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB17086
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
AHISGKMRKNYIRILTG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H148N28O22S1
DCEQFPWV
I
1958.36
11.51
5
0
7
+4
1.92
-0.359
97.65
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
1490
0.76
4
Residue Composition
number
1
A
2
R
1
N
0
D
0
C
0
E
0
Q
2
G
1
H
3
I
1
L
2
K
1
M
0
F
0
P
1
S
1
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 2 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 1 I: 3 L: 1 K: 2 M: 1 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 1 V: 0
Chemical Descriptors
17 reviewed residue count
C86H148N28O22S1 sequence-only estimate (linear, free termini)
1958.36 sequence-only estimate (linear, free termini)
11.51 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.92 sequence-only estimate (linear, free termini)
-0.359 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.