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Peptide record

TPDB17065

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB17065
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
CLPSGDCPDFLGCGRAIWCI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C92H140N24O26S4
NEQHKMTYV
C
2126.51
3.88
1
2
7
-1
0.05
0.680
83.00
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
5750
2.70
5
Residue Composition
number
1
A
1
R
0
N
2
D
4
C
0
E
0
Q
3
G
0
H
2
I
2
L
0
K
0
M
1
F
2
P
1
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 2 C: 4 E: 0 Q: 0 G: 3 H: 0 I: 2 L: 2 K: 0 M: 0 F: 1 P: 2 S: 1 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
20 reviewed residue count
C92H140N24O26S4 sequence-only estimate (linear, free termini)
2126.51 sequence-only estimate (linear, free termini)
3.88 sequence-only estimate (linear, free termini)
-1 sequence-only estimate (linear, free termini)
0.05 sequence-only estimate (linear, free termini)
0.680 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.