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Peptide record

TPDB16994

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB16994
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RIRGGRAAVLNA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C52H96N22O14
DCEQHKMFPSTWY
AR
1253.47
12.70
3
0
6
+3
2.52
0.008
114.17
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
0
0.00
1
Residue Composition
number
3
A
3
R
1
N
0
D
0
C
0
E
0
Q
2
G
0
H
1
I
1
L
0
K
0
M
0
F
0
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 3 R: 3 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 1 K: 0 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
12 reviewed residue count
C52H96N22O14 sequence-only estimate (linear, free termini)
1253.47 sequence-only estimate (linear, free termini)
12.70 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
2.52 sequence-only estimate (linear, free termini)
0.008 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.