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Peptide record

TPDB16978

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16978
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GKLICTTTVPWNASW
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C77H117N19O21S1
RDEQHMFY
T
1676.95
8.97
1
0
6
+1
0.05
0.180
78.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
11000
6.56
6
Residue Composition
number
1
A
0
R
1
N
0
D
1
C
0
E
0
Q
1
G
0
H
1
I
1
L
1
K
0
M
0
F
1
P
1
S
3
T
2
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 0 N: 1 D: 0 C: 1 E: 0 Q: 0 G: 1 H: 0 I: 1 L: 1 K: 1 M: 0 F: 0 P: 1 S: 1 T: 3 W: 2 Y: 0 V: 1
Chemical Descriptors
15 reviewed residue count
C77H117N19O21S1 sequence-only estimate (linear, free termini)
1676.95 sequence-only estimate (linear, free termini)
8.97 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.05 sequence-only estimate (linear, free termini)
0.180 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.