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Peptide record

TPDB16977

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16977
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GIKQLQARVLAVERY
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C78H134N24O21
NDCHMFPSTW
ARQLV
1744.07
10.41
3
1
8
+2
1.73
-0.067
130.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
0.85
3
Residue Composition
number
2
A
2
R
0
N
0
D
0
C
1
E
2
Q
1
G
0
H
1
I
2
L
1
K
0
M
0
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 2 R: 2 N: 0 D: 0 C: 0 E: 1 Q: 2 G: 1 H: 0 I: 1 L: 2 K: 1 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
15 reviewed residue count
C78H134N24O21 sequence-only estimate (linear, free termini)
1744.07 sequence-only estimate (linear, free termini)
10.41 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.73 sequence-only estimate (linear, free termini)
-0.067 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.