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Peptide record

TPDB16976

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16976
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LTVWGIKQLQARVLA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C79H134N22O19
NDCEHMFPSY
L
1696.07
11.49
2
0
9
+2
-0.04
0.700
156.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
5500
3.24
3
Residue Composition
number
2
A
1
R
0
N
0
D
0
C
0
E
2
Q
1
G
0
H
1
I
3
L
1
K
0
M
0
F
0
P
0
S
1
T
1
W
0
Y
2
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 2 G: 1 H: 0 I: 1 L: 3 K: 1 M: 0 F: 0 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 2
Chemical Descriptors
15 reviewed residue count
C79H134N22O19 sequence-only estimate (linear, free termini)
1696.07 sequence-only estimate (linear, free termini)
11.49 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
-0.04 sequence-only estimate (linear, free termini)
0.700 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.