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Peptide record

TPDB16975

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16975
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
HMLQLTVWGIKQLQA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C81H132N22O20S1
RNDCEFPSY
QL
1766.13
10.10
2
0
8
+1
-0.12
0.280
130.00
Mammalian: 3.5 hour Yeast: 10 min E.coli: >10 hour
5500
3.11
4
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
3
Q
1
G
1
H
1
I
3
L
1
K
1
M
0
F
0
P
0
S
1
T
1
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 3 G: 1 H: 1 I: 1 L: 3 K: 1 M: 1 F: 0 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 1
Chemical Descriptors
15 reviewed residue count
C81H132N22O20S1 sequence-only estimate (linear, free termini)
1766.13 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.12 sequence-only estimate (linear, free termini)
0.280 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.