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Peptide record

TPDB16974

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16974
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LKEQFKNKTIVFNQS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C83H134N22O24
ARDCGHMPWY
K
1824.11
10.32
3
1
5
+2
2.26
-0.840
71.33
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
0
0.00
6
Residue Composition
number
0
A
0
R
2
N
0
D
0
C
1
E
2
Q
0
G
0
H
1
I
1
L
3
K
0
M
2
F
0
P
1
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 2 D: 0 C: 0 E: 1 Q: 2 G: 0 H: 0 I: 1 L: 1 K: 3 M: 0 F: 2 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
15 reviewed residue count
C83H134N22O24 sequence-only estimate (linear, free termini)
1824.11 sequence-only estimate (linear, free termini)
10.32 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
2.26 sequence-only estimate (linear, free termini)
-0.840 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.