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Peptide record

TPDB16970

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16970
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
TIRQAHCNISRAKWN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C76H124N28O21S1
DEGLMFPYV
ARNI
1798.06
11.32
4
0
5
+3
3.18
-0.927
65.33
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
5500
3.06
6
Residue Composition
number
2
A
2
R
2
N
0
D
1
C
0
E
1
Q
0
G
1
H
2
I
0
L
1
K
0
M
0
F
0
P
1
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 2 N: 2 D: 0 C: 1 E: 0 Q: 1 G: 0 H: 1 I: 2 L: 0 K: 1 M: 0 F: 0 P: 0 S: 1 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
15 reviewed residue count
C76H124N28O21S1 sequence-only estimate (linear, free termini)
1798.06 sequence-only estimate (linear, free termini)
11.32 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
3.18 sequence-only estimate (linear, free termini)
-0.927 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.