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Peptide record

TPDB16968

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16968
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
YTTKNIIGTIRAQAH
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C74H123N23O22
DCELMFPSWV
IT
1686.93
10.42
3
0
6
+2
1.72
-0.353
91.33
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
1490
0.88
6
Residue Composition
number
2
A
1
R
1
N
0
D
0
C
0
E
1
Q
1
G
1
H
3
I
0
L
1
K
0
M
0
F
0
P
0
S
3
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 2 R: 1 N: 1 D: 0 C: 0 E: 0 Q: 1 G: 1 H: 1 I: 3 L: 0 K: 1 M: 0 F: 0 P: 0 S: 0 T: 3 W: 0 Y: 1 V: 0
Chemical Descriptors
15 reviewed residue count
C74H123N23O22 sequence-only estimate (linear, free termini)
1686.93 sequence-only estimate (linear, free termini)
10.42 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.72 sequence-only estimate (linear, free termini)
-0.353 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.