Back to search

Peptide record

TPDB16942

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16942
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
TMKDFPVTWPTGWWGGG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C92H123N21O23S1
ARNCEQHILSY
G
1923.18
6.75
1
1
6
-0
0.11
-0.476
17.06
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
16500
8.58
3
Residue Composition
number
0
A
0
R
0
N
1
D
0
C
0
E
0
Q
4
G
0
H
0
I
0
L
1
K
1
M
1
F
2
P
0
S
3
T
3
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 4 H: 0 I: 0 L: 0 K: 1 M: 1 F: 1 P: 2 S: 0 T: 3 W: 3 Y: 0 V: 1
Chemical Descriptors
17 reviewed residue count
C92H123N21O23S1 sequence-only estimate (linear, free termini)
1923.18 sequence-only estimate (linear, free termini)
6.75 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
0.11 sequence-only estimate (linear, free termini)
-0.476 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.