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Peptide record

TPDB16940

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB16940
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
TMKDFPVTWPTKWWKGG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C100H141N23O23S1
ARNCEQHILSY
KTW
2065.42
10.32
3
1
6
+2
0.87
-0.888
17.06
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
16500
7.99
3
Residue Composition
number
0
A
0
R
0
N
1
D
0
C
0
E
0
Q
2
G
0
H
0
I
0
L
3
K
1
M
1
F
2
P
0
S
3
T
3
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 0 L: 0 K: 3 M: 1 F: 1 P: 2 S: 0 T: 3 W: 3 Y: 0 V: 1
Chemical Descriptors
17 reviewed residue count
C100H141N23O23S1 sequence-only estimate (linear, free termini)
2065.42 sequence-only estimate (linear, free termini)
10.32 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
0.87 sequence-only estimate (linear, free termini)
-0.888 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.