TPDB

3D PDB MODEL

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TPDB ID TPDB16884

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 70-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MINTAWKIIKALQKYGTKAYNVIKKGGQAMYDSFMAAKAKGWTHAAWWLVEHGSTLGTFYDLLKAAGLID

FASTA

>TPDB16884|Antibacterial|length=70
MINTAWKIIKALQKYGTKAYNVIKKGGQAMYDSFMAAKAKGWTHAAWWLVEHGSTLGTFYDLLKAAGLID

Formula C363H555N91O94S3

Absent Amino Acids RCP

Common Amino Acids A

Mass 7794.13

PI 10.05

Basic Residues 11

Acidic Residues 4

Hydrophobic Residues 37

Net Charge +5

Boman Index -1.18

Hydrophobicity -0.020

Aliphatic Index 85.29

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 27960

Absorbance 280nm 358.73

Polar Residues 15

number

11

A

0

R

2

N

3

D

0

C

1

E

2

Q

7

G

2

H

5

I

6

L

9

K

3

M

2

F

0

P

2

S

5

T

4

W

4

Y

2

V

Amino Acid Distribution

A: 11 R: 0 N: 2 D: 3 C: 0 E: 1 Q: 2 G: 7 H: 2 I: 5 L: 6 K: 9 M: 3 F: 2 P: 0 S: 2 T: 5 W: 4 Y: 4 V: 2

Length

70

Formula

C363H555N91O94S3

Mass

7794.13

PI

10.05

Net Charge

+5

Boman Index

-1.18

Hydrophobicity

-0.020

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.