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Peptide record

TPDB16882

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB16882
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GRLQAFLAKMEIAAQTL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C83H141N23O23S1
NDCHPSWYV
A
1861.23
10.09
2
1
10
+1
0.46
0.459
115.29
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
3
Residue Composition
number
4
A
1
R
0
N
0
D
0
C
1
E
2
Q
1
G
0
H
1
I
3
L
1
K
1
M
1
F
0
P
0
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 4 R: 1 N: 0 D: 0 C: 0 E: 1 Q: 2 G: 1 H: 0 I: 1 L: 3 K: 1 M: 1 F: 1 P: 0 S: 0 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C83H141N23O23S1 sequence-only estimate (linear, free termini)
1861.23 sequence-only estimate (linear, free termini)
10.09 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.46 sequence-only estimate (linear, free termini)
0.459 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.