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Peptide record

TPDB16871

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB16871
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
HITGGGLT
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C32H54N10O11
ARNDCEQKMFPSWYV
G
754.84
7.85
1
0
2
+0
-0.36
0.312
97.50
Mammalian: 3.5 hour Yeast: 10 min E.coli: >10 hour
0
0.00
2
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
0
E
0
Q
3
G
1
H
1
I
1
L
0
K
0
M
0
F
0
P
0
S
2
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 3 H: 1 I: 1 L: 1 K: 0 M: 0 F: 0 P: 0 S: 0 T: 2 W: 0 Y: 0 V: 0
Chemical Descriptors
8 reviewed residue count
C32H54N10O11 sequence-only estimate (linear, free termini)
754.84 sequence-only estimate (linear, free termini)
7.85 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
-0.36 sequence-only estimate (linear, free termini)
0.312 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.