TPDB

3D PDB MODEL

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TPDB ID TPDB16842

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 52-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

QGWEAVAAAVASKIVGLWRNETTELLGHECKFTVKPYIKRFQLNYKGGRLWC

FASTA

>TPDB16842|Antibacterial|length=52
QGWEAVAAAVASKIVGLWRNETTELLGHECKFTVKPYIKRFQLNYKGGRLWC

Formula C274H423N75O71S2

Absent Amino Acids DM

Common Amino Acids AGLK

Mass 5967.95

PI 9.79

Basic Residues 9

Acidic Residues 4

Hydrophobic Residues 23

Net Charge +4

Boman Index 5.31

Hydrophobicity -0.223

Aliphatic Index 84.42

Half Life

Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour

Extinction Coefficient Cystines 19605

Absorbance 280nm 328.50

Polar Residues 12

number

5

A

3

R

2

N

0

D

2

C

4

E

2

Q

5

G

1

H

2

I

5

L

5

K

0

M

2

F

1

P

1

S

3

T

3

W

2

Y

4

V

Amino Acid Distribution

A: 5 R: 3 N: 2 D: 0 C: 2 E: 4 Q: 2 G: 5 H: 1 I: 2 L: 5 K: 5 M: 0 F: 2 P: 1 S: 1 T: 3 W: 3 Y: 2 V: 4

Length

52

Formula

C274H423N75O71S2

Mass

5967.95

PI

9.79

Net Charge

+4

Boman Index

5.31

Hydrophobicity

-0.223

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.