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Peptide record

TPDB16573

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB16573
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GRVPIIYTNRKTGVCKRM
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C90H158N30O23S2
ADEQHLFSW
R
2092.55
11.41
5
0
6
+5
2.46
-0.450
75.56
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
0.71
5
Residue Composition
number
0
A
3
R
1
N
0
D
1
C
0
E
0
Q
2
G
0
H
2
I
0
L
2
K
1
M
0
F
1
P
0
S
2
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 3 N: 1 D: 0 C: 1 E: 0 Q: 0 G: 2 H: 0 I: 2 L: 0 K: 2 M: 1 F: 0 P: 1 S: 0 T: 2 W: 0 Y: 1 V: 2
Chemical Descriptors
18 reviewed residue count
C90H158N30O23S2 sequence-only estimate (linear, free termini)
2092.55 sequence-only estimate (linear, free termini)
11.41 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
2.46 sequence-only estimate (linear, free termini)
-0.450 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.