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Peptide record

TPDB16521

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB16521
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
PWKLSLHL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C49H76N12O10
ARNDCEQGIMFTYV
L
993.22
10.10
2
0
4
+1
-0.43
0.125
146.25
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
5500
5.54
1
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
1
H
0
I
3
L
1
K
0
M
0
F
1
P
1
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 3 K: 1 M: 0 F: 0 P: 1 S: 1 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
8 reviewed residue count
C49H76N12O10 sequence-only estimate (linear, free termini)
993.22 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.43 sequence-only estimate (linear, free termini)
0.125 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.