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Peptide record

TPDB16509

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB16509
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
FWSTIWNAAKSL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C69H98N16O17
RDCEQGHMPYV
ASW
1423.63
10.10
1
0
7
+1
0.04
0.267
81.67
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
11000
7.73
4
Residue Composition
number
2
A
0
R
1
N
0
D
0
C
0
E
0
Q
0
G
0
H
1
I
1
L
1
K
0
M
1
F
0
P
2
S
1
T
2
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 1 L: 1 K: 1 M: 0 F: 1 P: 0 S: 2 T: 1 W: 2 Y: 0 V: 0
Chemical Descriptors
12 reviewed residue count
C69H98N16O17 sequence-only estimate (linear, free termini)
1423.63 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.04 sequence-only estimate (linear, free termini)
0.267 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.