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Peptide record

TPDB16498

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB16498
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
CPKRWGRWLRKIRRWRC
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C106H170N40O18S2
ANDEQHMFSTYV
R
2356.89
12.41
8
0
5
+8
4.72
-1.541
45.88
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
16625
7.05
2
Residue Composition
number
0
A
6
R
0
N
0
D
2
C
0
E
0
Q
1
G
0
H
1
I
1
L
2
K
0
M
0
F
1
P
0
S
0
T
3
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 6 N: 0 D: 0 C: 2 E: 0 Q: 0 G: 1 H: 0 I: 1 L: 1 K: 2 M: 0 F: 0 P: 1 S: 0 T: 0 W: 3 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C106H170N40O18S2 sequence-only estimate (linear, free termini)
2356.89 sequence-only estimate (linear, free termini)
12.41 sequence-only estimate (linear, free termini)
+8 sequence-only estimate (linear, free termini)
4.72 sequence-only estimate (linear, free termini)
-1.541 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.