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Peptide record

TPDB16480

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB16480
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
RIKTVTSFDLPALRFLKL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C100H168N26O24
NCEQGHMWY
L
2118.59
11.47
4
1
9
+3
1.21
0.400
130.00
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
0
0.00
3
Residue Composition
number
1
A
2
R
0
N
1
D
0
C
0
E
0
Q
0
G
0
H
1
I
4
L
2
K
0
M
2
F
1
P
1
S
2
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 2 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 1 L: 4 K: 2 M: 0 F: 2 P: 1 S: 1 T: 2 W: 0 Y: 0 V: 1
Chemical Descriptors
18 reviewed residue count
C100H168N26O24 sequence-only estimate (linear, free termini)
2118.59 sequence-only estimate (linear, free termini)
11.47 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.21 sequence-only estimate (linear, free termini)
0.400 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.