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Peptide record

TPDB16476

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB16476
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
QGRNEDEEKGAIVKVK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C75H130N24O27
CHLMFPSTWY
EK
1800.00
7.15
4
4
4
+0
3.51
-1.456
66.88
Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour
0
0.00
2
Residue Composition
number
1
A
1
R
1
N
1
D
0
C
3
E
1
Q
2
G
0
H
1
I
0
L
3
K
0
M
0
F
0
P
0
S
0
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 1 R: 1 N: 1 D: 1 C: 0 E: 3 Q: 1 G: 2 H: 0 I: 1 L: 0 K: 3 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 2
Chemical Descriptors
16 reviewed residue count
C75H130N24O27 sequence-only estimate (linear, free termini)
1800.00 sequence-only estimate (linear, free termini)
7.15 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
3.51 sequence-only estimate (linear, free termini)
-1.456 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.