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Peptide record

TPDB16471

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB16471
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KTNDRAAIGKLVGATS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C67H120N22O23
CEQHMFPWY
A
1601.82
10.59
3
1
6
+2
1.80
-0.275
85.62
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
0
0.00
4
Residue Composition
number
3
A
1
R
1
N
1
D
0
C
0
E
0
Q
2
G
0
H
1
I
1
L
2
K
0
M
0
F
0
P
1
S
2
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 3 R: 1 N: 1 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 1 K: 2 M: 0 F: 0 P: 0 S: 1 T: 2 W: 0 Y: 0 V: 1
Chemical Descriptors
16 reviewed residue count
C67H120N22O23 sequence-only estimate (linear, free termini)
1601.82 sequence-only estimate (linear, free termini)
10.59 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.80 sequence-only estimate (linear, free termini)
-0.275 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.