Back to search

Peptide record

TPDB16462

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16462
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
FVPWFCKFLCRIL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C84H122N18O14S2
ANDEQGHMSTY
F
1672.12
9.15
2
0
8
+2
-0.94
1.446
112.31
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
5625
3.36
2
Residue Composition
number
0
A
1
R
0
N
0
D
2
C
0
E
0
Q
0
G
0
H
1
I
2
L
1
K
0
M
3
F
1
P
0
S
0
T
1
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 2 E: 0 Q: 0 G: 0 H: 0 I: 1 L: 2 K: 1 M: 0 F: 3 P: 1 S: 0 T: 0 W: 1 Y: 0 V: 1
Chemical Descriptors
13 reviewed residue count
C84H122N18O14S2 sequence-only estimate (linear, free termini)
1672.12 sequence-only estimate (linear, free termini)
9.15 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
-0.94 sequence-only estimate (linear, free termini)
1.446 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.