TPDB

3D PDB MODEL

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TPDB ID TPDB16435

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 64-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MGSNFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHGCPCYRDKKNSKGKSKCP

FASTA

>TPDB16435|Antibacterial|length=64
MGSNFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHGCPCYRDKKNSKGKSKCP

Formula C287H471N89O88S13

Absent Amino Acids QW

Common Amino Acids C

Mass 6993.22

PI 8.73

Basic Residues 15

Acidic Residues 5

Hydrophobic Residues 12

Net Charge +9

Boman Index 16.29

Hydrophobicity -0.722

Aliphatic Index 32.03

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5220

Absorbance 280nm 74.64

Polar Residues 25

number

2

A

3

R

3

N

3

D

12

C

2

E

0

Q

7

G

1

H

1

I

3

L

11

K

1

M

1

F

3

P

6

S

1

T

0

W

3

Y

1

V

Amino Acid Distribution

A: 2 R: 3 N: 3 D: 3 C: 12 E: 2 Q: 0 G: 7 H: 1 I: 1 L: 3 K: 11 M: 1 F: 1 P: 3 S: 6 T: 1 W: 0 Y: 3 V: 1

Length

64

Formula

C287H471N89O88S13

Mass

6993.22

PI

8.73

Net Charge

+9

Boman Index

16.29

Hydrophobicity

-0.722

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.