TPDB

3D PDB MODEL

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TPDB ID TPDB16433

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

modified_plain

Has_Modification Yes

Description A 18-aa modified antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

KURRLUYKQRUVTYURGR

FASTA

>TPDB16433|Antibacterial|length=18
KURRLUYKQRUVTYURGR

Formula C82H142N32O19

Absent Amino Acids ANDCEHIMFPSW

Common Amino Acids R

Mass 1880.23

PI 12.24

Basic Residues 7

Acidic Residues 0

Hydrophobic Residues 4

Net Charge +7

Boman Index 4.39

Hydrophobicity -1.639

Aliphatic Index 37.78

Half Life

Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 2980

Absorbance 280nm 158.49

Polar Residues 4

number

0

A

5

R

0

N

0

D

0

C

0

E

1

Q

1

G

0

H

0

I

1

L

2

K

0

M

0

F

0

P

0

S

1

T

0

W

2

Y

1

V

Amino Acid Distribution

A: 0 R: 5 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 1 H: 0 I: 0 L: 1 K: 2 M: 0 F: 0 P: 0 S: 0 T: 1 W: 0 Y: 2 V: 1

Length

18

Formula

C82H142N32O19

Mass

1880.23

PI

12.24

Net Charge

+7

Boman Index

4.39

Hydrophobicity

-1.639

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.