TPDB

3D PDB MODEL

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TPDB ID TPDB16431

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

modified_plain

Has_Modification Yes

Description A 36-aa modified antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

GASXDXHPFVGTYWFGISNXPSGHGYRKKXASFFGV

FASTA

>TPDB16431|Antibacterial|length=36
GASXDXHPFVGTYWFGISNXPSGHGYRKKXASFFGV

Formula C163H225N43O43

Absent Amino Acids CEQLM

Common Amino Acids G

Mass 3474.84

PI 9.97

Basic Residues 5

Acidic Residues 1

Hydrophobic Residues 12

Net Charge +2

Boman Index -0.78

Hydrophobicity -0.306

Aliphatic Index 32.50

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8480

Absorbance 280nm 244.04

Polar Residues 8

number

2

A

1

R

1

N

1

D

0

C

0

E

0

Q

6

G

2

H

1

I

0

L

2

K

0

M

4

F

2

P

4

S

1

T

1

W

2

Y

2

V

Amino Acid Distribution

A: 2 R: 1 N: 1 D: 1 C: 0 E: 0 Q: 0 G: 6 H: 2 I: 1 L: 0 K: 2 M: 0 F: 4 P: 2 S: 4 T: 1 W: 1 Y: 2 V: 2

Length

36

Formula

C163H225N43O43

Mass

3474.84

PI

9.97

Net Charge

+2

Boman Index

-0.78

Hydrophobicity

-0.306

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.