TPDB

3D PDB MODEL

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TPDB ID TPDB16417

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

modified_plain

Has_Modification Yes

Description A 34-aa modified antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

FBAIZMAXPGAKXGALMBANYKXAXAHASIKVZK

FASTA

>TPDB16417|Antibacterial|length=34
FBAIZMAXPGAKXGALMBANYKXAXAHASIKVZK

Formula C121H199N33O30S2

Absent Amino Acids RDCEQTW

Common Amino Acids A

Mass 2660.23

PI 10.64

Basic Residues 5

Acidic Residues 0

Hydrophobic Residues 16

Net Charge +4

Boman Index 0.94

Hydrophobicity 0.329

Aliphatic Index 66.47

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 1490

Absorbance 280nm 56.01

Polar Residues 3

number

8

A

0

R

1

N

0

D

0

C

0

E

0

Q

2

G

1

H

2

I

1

L

4

K

2

M

1

F

1

P

1

S

0

T

0

W

1

Y

1

V

Amino Acid Distribution

A: 8 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 1 I: 2 L: 1 K: 4 M: 2 F: 1 P: 1 S: 1 T: 0 W: 0 Y: 1 V: 1

Length

34

Formula

C121H199N33O30S2

Mass

2660.23

PI

10.64

Net Charge

+4

Boman Index

0.94

Hydrophobicity

0.329

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.