TPDB

3D PDB MODEL

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TPDB ID TPDB16397

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 140-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MLLYAVVIVSAVLGLSEGFATGMVSQACLQCICMAESGCTNLPCKMDVGSLSCGYFQIKHNYWLDCGSIGGSWQACAADKTCASQCVQNYMARYVNHYNCPHTCEAYAREHNGGPNGCHHSNTLSYWHHVQSQPGCSNVH

FASTA

>TPDB16397|Antibacterial|length=140
MLLYAVVIVSAVLGLSEGFATGMVSQACLQCICMAESGCTNLPCKMDVGSLSCGYFQIKHNYWLDCGSIGGSWQACAADKTCASQCVQNYMARYVNHYNCPHTCEAYAREHNGGPNGCHHSNTLSYWHHVQSQPGCSNVH

Formula C651H981N187O198S19

Absent Amino Acids

Common Amino Acids C

Mass 15204.22

PI 6.50

Basic Residues 14

Acidic Residues 7

Hydrophobic Residues 53

Net Charge -2

Boman Index 10.28

Hydrophobicity -0.044

Aliphatic Index 65.50

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 29295

Absorbance 280nm 192.68

Polar Residues 57

number

12

A

2

R

9

N

3

D

14

C

4

E

8

Q

13

G

9

H

4

I

9

L

3

K

5

M

2

F

4

P

13

S

5

T

3

W

8

Y

10

V

Amino Acid Distribution

A: 12 R: 2 N: 9 D: 3 C: 14 E: 4 Q: 8 G: 13 H: 9 I: 4 L: 9 K: 3 M: 5 F: 2 P: 4 S: 13 T: 5 W: 3 Y: 8 V: 10

Length

140

Formula

C651H981N187O198S19

Mass

15204.22

PI

6.50

Net Charge

-2

Boman Index

10.28

Hydrophobicity

-0.044

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.