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Peptide record

TPDB16395

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB16395
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LVQYRGEVQAMLGQSTEE
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H140N24O31S1
NDCHIKFPW
EQ
2038.26
3.96
1
3
7
-2
1.90
-0.522
81.11
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
1490
0.73
6
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
3
E
3
Q
2
G
0
H
0
I
2
L
0
K
1
M
0
F
0
P
1
S
1
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 3 Q: 3 G: 2 H: 0 I: 0 L: 2 K: 0 M: 1 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 1 V: 2
Chemical Descriptors
18 reviewed residue count
C86H140N24O31S1 sequence-only estimate (linear, free termini)
2038.26 sequence-only estimate (linear, free termini)
3.96 sequence-only estimate (linear, free termini)
-2 sequence-only estimate (linear, free termini)
1.90 sequence-only estimate (linear, free termini)
-0.522 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.