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Peptide record

TPDB16386

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB16386
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
KVAGTWYSL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C49H73N11O13
RNDCEQHIMFP
AGLKSTWYV
1024.18
9.74
1
0
5
+1
-0.26
0.200
86.67
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
6990
6.82
3
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
0
I
1
L
1
K
0
M
0
F
0
P
1
S
1
T
1
W
1
Y
1
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 1 K: 1 M: 0 F: 0 P: 0 S: 1 T: 1 W: 1 Y: 1 V: 1
Chemical Descriptors
9 reviewed residue count
C49H73N11O13 sequence-only estimate (linear, free termini)
1024.18 sequence-only estimate (linear, free termini)
9.74 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.26 sequence-only estimate (linear, free termini)
0.200 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.