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Peptide record

TPDB16385

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB16385
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
VLVLDTDYKKYL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C70H112N14O20
ARNCEQGHIMFPSW
L
1469.74
6.76
2
2
7
-0
0.71
0.142
145.83
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
2980
2.03
3
Residue Composition
number
0
A
0
R
0
N
2
D
0
C
0
E
0
Q
0
G
0
H
0
I
3
L
2
K
0
M
0
F
0
P
0
S
1
T
0
W
2
Y
2
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 2 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 3 K: 2 M: 0 F: 0 P: 0 S: 0 T: 1 W: 0 Y: 2 V: 2
Chemical Descriptors
12 reviewed residue count
C70H112N14O20 sequence-only estimate (linear, free termini)
1469.74 sequence-only estimate (linear, free termini)
6.76 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
0.71 sequence-only estimate (linear, free termini)
0.142 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.