TPDB

3D PDB MODEL

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TPDB ID TPDB16352

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 15-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

KWFTKCGLVHELRRQ

FASTA

>TPDB16352|Antibacterial|length=15
KWFTKCGLVHELRRQ

Formula C86H137N27O20S1

Absent Amino Acids ANDIMPSY

Common Amino Acids RLK

Mass 1901.26

PI 10.58

Basic Residues 5

Acidic Residues 1

Hydrophobic Residues 5

Net Charge +3

Boman Index 3.04

Hydrophobicity -0.793

Aliphatic Index 71.33

Half Life

Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 5500

Absorbance 280nm 289.28

Polar Residues 3

number

0

A

2

R

0

N

0

D

1

C

1

E

1

Q

1

G

1

H

0

I

2

L

2

K

0

M

1

F

0

P

0

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 0 R: 2 N: 0 D: 0 C: 1 E: 1 Q: 1 G: 1 H: 1 I: 0 L: 2 K: 2 M: 0 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 1

Length

15

Formula

C86H137N27O20S1

Mass

1901.26

PI

10.58

Net Charge

+3

Boman Index

3.04

Hydrophobicity

-0.793

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.