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Peptide record

TPDB16338

Antibacterial standard
7 amino acids
Basic Information
3D PDB MODEL
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TPDB16338
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 7-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
NNHYLPR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C40H60N14O11
ADCEQGIKMFSTWV
N
913.00
9.88
2
0
2
+1
4.01
-1.971
55.71
Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour
1490
1.63
3
Residue Composition
number
0
A
1
R
2
N
0
D
0
C
0
E
0
Q
0
G
1
H
0
I
1
L
0
K
0
M
0
F
1
P
0
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 2 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 1 K: 0 M: 0 F: 0 P: 1 S: 0 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
7 reviewed residue count
C40H60N14O11 sequence-only estimate (linear, free termini)
913.00 sequence-only estimate (linear, free termini)
9.88 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
4.01 sequence-only estimate (linear, free termini)
-1.971 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.